ywbI [2019-03-13 16:59:20]

transcriptional regulator (LysR family), activator of the ywbH-ywbG operon

locus: BSU38310

pI: 5.93

mw: 34.52 kDa

protein length: 301 aa

gene length: 906 bp

function: control of expression of the ywbH-ywbG operon

product: transcriptional regulator (LysR family)

essential: no

synonyms: ipa-24d

Genomic Context

categories

• [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]

Gene

Coordinates: 3,932,198 → 3,933,103

The protein

Protein family

• [SW|LysR family]

Effectors of protein activity

• acetate activates [protein|CC55120C2AF455FA2AEAE39E21F57897B2B5BC39|YwbI] to bind DNA [Pubmed|26060272]

Expression and Regulation

Operons

• genes: [gene|CC55120C2AF455FA2AEAE39E21F57897B2B5BC39|ywbI]-[gene|9B82059498F72A67282DD54892EF02A305E3C674|thiM]-[gene|8FAEB6342E087BEDC16FDF5585B03B90ACFF8D11|thiE]
  description: [Pubmed|9139923]

  sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|9139923], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]

Biological materials

Mutant

• MGNA-B675 (ywbI::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1674 NBRP B. subtilis, Japan]
• BKE38310 (Δ[gene|CC55120C2AF455FA2AEAE39E21F57897B2B5BC39|ywbI]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE38310 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGCGCTTCACCCTTTCTA, downstream forward: _UP4_AAAGATAGTAAAGGATGATG
• BKK38310 (Δ[gene|CC55120C2AF455FA2AEAE39E21F57897B2B5BC39|ywbI]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK38310 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGCGCTTCACCCTTTCTA, downstream forward: _UP4_AAAGATAGTAAAGGATGATG

References

• 9139923,26060272